| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5578 |
| Andaman and Nicobar Islands | Sea/Bay/Gulf | native | 118627 |
| Bay of Bengal | Sea/Bay/Gulf | native | 118627 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 247 |
| Indian Ocean | Sea/Bay/Gulf | native | 247 |
| Indonesian Sea | Sea/Bay/Gulf | native | 247 |
| North Australian Shelf | Sea/Bay/Gulf | native | 247 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 127228 |
| Pacific Ocean | Sea/Bay/Gulf | native | 247 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sponge Seamount | Seamount | native | 50734 |
| Stylaster Seamount | Seamount | native | 50734 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 31367 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |