| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bangweulu | River (basin) | native | 95585 |
| Coastal Southwest Angola | River (basin) | native | 11970 |
| Congo | River (basin) | native | 11970 |
| Cuanza | River (basin) | native | 1880 |
| Ethiopian | Zoogeographic realm | endemic | 2801 |
| Kasai | River (basin) | native | 41590 |
| Kunene | River (basin) | native | 33857 |
| Limpopo | River (basin) | native | 13332 |
| Malawi | Lake | questionable | 11970 |
| Middle Zambezi | River (basin) | native | 95585 |
| Mweru | Lake | native | 46251 |
| Okavango | River (basin) | native | 2801 |
| Tanganyika | Lake | native | 52193 |
| Upper Lualaba | River (basin) | native | 41590 |
| Upper Zambezi | River (basin) | native | 95585 |
| Zambezi | River (basin) | native | 13332 |