| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Oman | Sea/Bay/Gulf | native | 11441 |
| Indian Ocean | Sea/Bay/Gulf | native | 90102 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 9710 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 119714 |
| Pagbilao Bay | Sea/Bay/Gulf | native | 11338 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 11441 |
| Ruerhmen River | River (basin) | native | 36073 |
| Shark Bay | Sea/Bay/Gulf | native | 115274 |
| Shiliao River | River (basin) | native | 36073 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 119714 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 130287 |
| Tañon Strait | Sea/Bay/Gulf | native | 107276 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 115274 |
| West Philippine Sea | Sea/Bay/Gulf | native | 130287 |