| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Arafura Sea | Sea/Bay/Gulf | native | 126083 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Gulf of Tonkin | Sea/Bay/Gulf | native | 126083 |
| Indian Ocean | Sea/Bay/Gulf | native | 6771 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 11790 |
| Manila Bay | Sea/Bay/Gulf | native | 11790 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5978 |
| Samar Sea | Sea/Bay/Gulf | native | 126083 |
| San Miguel Bay | Sea/Bay/Gulf | native | 11790 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Visayan Sea | Sea/Bay/Gulf | native | 126083 |
| West Philippine Sea | Sea/Bay/Gulf | native | 11790 |