| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 90102 |
| Coral Sea and GBR | Sea/Bay/Gulf | questionable | 48497 |
| Davao Gulf | Sea/Bay/Gulf | questionable | 45589 |
| Great Barrier Reef | Sea/Bay/Gulf | questionable | 48497 |
| Indian Ocean | Sea/Bay/Gulf | native | 1602 |
| Insular Pacific-Hawaiian | Sea/Bay/Gulf | questionable | 48497 |
| Lagonoy Gulf | Sea/Bay/Gulf | questionable | 45589 |
| Leyte Gulf | Sea/Bay/Gulf | questionable | 45589 |
| Lingayen Gulf | Sea/Bay/Gulf | questionable | 45589 |
| Lutao Island | Sea/Bay/Gulf | native | 11104 |
| Moro Gulf | Sea/Bay/Gulf | questionable | 106380 |
| Pacific Ocean | Sea/Bay/Gulf | questionable | 48497 |
| Ragay Gulf | Sea/Bay/Gulf | questionable | 280 |
| Sarangani Bay | Sea/Bay/Gulf | questionable | 106380 |
| South China Sea | Sea/Bay/Gulf | questionable | 45589 |
| Southern China | Sea/Bay/Gulf | native | 119494 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | questionable | 45589 |
| Tayabas Bay | Sea/Bay/Gulf | questionable | 45589 |
| Verde Island Passage | Sea/Bay/Gulf | native | 107854 |