| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Australian | Zoogeographic realm | introduced | 2847 |
| Buluan | Lake | introduced | 13492 |
| Chao Phraya River | River (basin) | native | 26336 |
| Great Lake | Lake | native | 36651 |
| Laguna de Bay | Lake | introduced | 13460 |
| Lake Lanao | Lake | introduced | 10888 |
| Lake Mainit | Lake | introduced | 4867 |
| Magdalena | River (basin) | introduced | 78646 |
| Mekong | River (basin) | native | 30857 |
| Naujan Lake | Lake | introduced | 13446 |
| Neotropical | Zoogeographic realm | introduced | 43281 |
| Oriental | Zoogeographic realm | endemic | 5736 |
| Orinoco | River (basin) | introduced | 1739 |
| Taal Lake | Lake | introduced | 12165 |
| Toba | Lake | introduced | 57970 |
| Tonle Sap | Lake | native | 36651 |